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PDB Downloader (Source)

StreamableDeprecatedVernalis PDB Connector KNIME nodes package version 1.27.0.qualifier by Vernalis (R&D), UK

This node, and the corresponding manipulator node, allows the downloading of structure and sequence files from the RCSB PDB. The formats supported are:
  • PDB
  • mmCIF
  • Structure Factors
  • PDBML/XML (PDBx)
  • FASTA Format Sequence
PDB files are cast as PDB cells, and PDBML as XML cells. No checking the the structure IDs is carried out - invalid IDs will return cells containing missing values. WARNING - the PDBx option can result in very large tables!

This node was developed by Vernalis (Cambridge, UK). For feedback and more information, please contact knime@vernalis.com

Options

Enter a PDB ID
Enter a PDB ID, or list of PDB IDs separated by ';'
Download formats
Select the desired file format(s) from the available options - PDB, mmCIF, Structure Factors, PDBML/XML (PDBx), FASTA Sequence

Output Ports

Icon
Output table with the downloaded file(s)

Best Friends (Incoming)

Best Friends (Outgoing)

Workflows

Developers

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