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PDB Reader

Schrödinger extension for KNIME Workbench version 20.4.144.202011111133 by Schrödinger

Read molecules in PDB format.

To remove files from the list select the file and press the 'Delete' key.

To select all files in the list press Ctrl-A.

To add all files that match a pattern, using an asterisk (*) into the dialog "File Name" field. Press return, and the file filter will show up in the "Files of Type" drop down, then press Ctrl-A to select all of the files that show up with that filter. The list of files will then show up in the "File Name:" field, space delimited with double quotes around each file name. Then press "Open" to load all of those files.

Options

File Name
The name of the file to be loaded
File can be an URL like:
knime://LOCAL/path/to/file - knime://LOCAL refers to the current workspace
knime://knime.workflow/path/to/file - knime://knime.workspace refers to the current workflow
Import all structures
Whether the entire file should be loaded
Start
If not all structures are loaded, which number structure should loader start at (disabled if Import all structures is set)
End
Should the file be loaded until to end (disabled if Import all structures is set)
Total
If not all structures are imported and not loaded until the end, how many total structures should be loaded (disabled if Import all structures or End is set)

Output Ports

Icon
Molecules in PDB format

Best Friends (Incoming)

Best Friends (Outgoing)

Workflows

Installation

To use this node in KNIME, install Schrödinger Extensions for KNIME from the following update site:

KNIME 4.2

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Developers

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