Ligands and Proteins Viewer

This Node Is Deprecated — This version of the node has been replaced with a new and improved version. The old version is kept for backwards-compatibility, but for all new workflows we suggest to use the version linked below.
Go to Suggested ReplacementLigands and Proteins Viewer

Node to view ligands and proteins in a web browser

When view is opened then it will automatically open a web browser with the viewer.

Source code available at Github.

Options

Ligands: Column with SDF molecules
Column with SDF or Mol2 formatted molecules in port 0.
Ligands: Column with labels (*)
Column with labels in port 0, if no column is selected uses Row ID.
Proteins: Column with PDB molecules
Column with PDB or Mol2 formatted molecules in port 1.
Proteins: Column with labels (*)
Column with labels in port 1, if no column is selected uses Row ID.

Input Ports

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Table containing Ligands in SDF or Mol2 format
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Table containing Proteins in PDB or Mol2 format

Output Ports

This node has no output ports

Popular Predecessors

Popular Successors

Views

This node has no views

Workflows

  • No workflows found

Links

Developers

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Installation

To use this node in KNIME, install the extension 3D-e-Chem KNIME nodes from the below update site following our NodePit Product and Node Installation Guide:

v5.2

A zipped version of the software site can be downloaded here.

Plugin provider: Netherlands eScience Center
Plugin version: 2.0.3.v202311220951
On NodePit since: 2023-12-06
Last update: 2024-12-18
Tags: Deprecated
KNIME versions: v5.3, v5.2, v5.1, v4.7, v4.6, v4.5, v4.4, v4.3, v4.2, v4.1, v4.0, v3.7, v3.6

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