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Ligands and Proteins Viewer

DeprecatedMolViewer Nodes version 2.0.2.v201911071546 by Netherlands eScience Center

Node to view ligands and proteins in a web browser

When view is opened then it will automatically open a web browser with the viewer.

Source code available at Github.

Options

Ligands: Column with SDF molecules
Column with SDF or Mol2 formatted molecules in port 0.
Ligands: Column with labels (*)
Column with labels in port 0, if no column is selected uses Row ID.
Proteins: Column with PDB molecules
Column with PDB or Mol2 formatted molecules in port 1.
Proteins: Column with labels (*)
Column with labels in port 1, if no column is selected uses Row ID.

Input Ports

Table containing Ligands in SDF or Mol2 format
Table containing Proteins in PDB or Mol2 format

Best Friends (Incoming)

Best Friends (Outgoing)

Installation

To use this node in KNIME, install 3D-e-Chem KNIME nodes from the following update site:

KNIME 4.1
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Developers

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