Ligands and Proteins Viewer

This Node Is Deprecated — This version of the node has been replaced with a new and improved version. The old version is kept for backwards-compatibility, but for all new workflows we suggest to use the version linked below.
Go to Suggested ReplacementLigands and Proteins Viewer

Node to view ligands and proteins in a web browser

When view is opened then it will automatically open a web browser with the viewer.

Source code available at Github.

Options

Ligands: Column with SDF molecules
Column with SDF or Mol2 formatted molecules in port 0.
Ligands: Column with labels (*)
Column with labels in port 0, if no column is selected uses Row ID.
Proteins: Column with PDB molecules
Column with PDB or Mol2 formatted molecules in port 1.
Proteins: Column with labels (*)
Column with labels in port 1, if no column is selected uses Row ID.

Input Ports

Icon
Table containing Ligands in SDF or Mol2 format
Icon
Table containing Proteins in PDB or Mol2 format

Output Ports

This node has no output ports

Popular Predecessors

Popular Successors

Views

This node has no views

Workflows

  • No workflows found

Links

Developers

You want to see the source code for this node? Click the following button and we’ll use our super-powers to find it for you.

Installation

To use this node in KNIME, install the extension 3D-e-Chem KNIME nodes from the below update site following our NodePit Product and Node Installation Guide:

v5.2

A zipped version of the software site can be downloaded here.

Plugin provider: Netherlands eScience Center
Plugin version: 2.0.3.v202311220951
On NodePit since: 2023-12-06
Last update: 2024-11-13
Tags: Deprecated
KNIME versions: v5.3, v5.2, v5.1, v4.7, v4.6, v4.5, v4.4, v4.3, v4.2, v4.1, v4.0, v3.7, v3.6

Deploy, schedule, execute, and monitor your KNIME workflows locally, in the cloud or on-premises – with our brand new NodePit Runner.

Try NodePit Runner!