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Convert Fingerprint to Table

Schrödinger Nodes for Suite2018-1 version 0.0.1.7B27VcMf4_L7A58S5A8G55JS by Schrödinger

Extract fingerprints to table format. By choosing to omit bits using the settings below, the performance of the node will increase by only including bits/columns that are sufficiently populated. Using 0% and 100% for the omit parameters below respectively may result in an output data table that has a very large number of columns and may have a serious (negative) effect on performance.

Backend implementation

utilities/canvasFPBinary2CSV
canvasFPBinary2CSV is used to implement this node.

(canvasFPShow is deprecated)

Options

Include additional molecule data fields in output fingerprints
If the fingerprints were generated with data fields, these will also be included in the output table.
Omit bits that are set by less than fraction
This value controls the columns in the output to exclude columns that have the percentage of rows set less than the percentage specified. Default: 1.0%
Omit bits that are set by more than fraction
This value controls the columns in the output to exclude columns that have the percentage of rows set more than the percentage specified. Default: 99.0%
Omit bits only set in single molecule
Omit bits set in all molecules
Force Binary Representation
If binary fp has been rescaled to continuous values, force binary (0,1) representation.
Include bits that are unset in all molecules
This option may consume large amounts of disk space and will be ignored unless the input FPs have been generated with reduced precision (reduced by at least 22 bits). All omit bits options will be ignored on selecting this option.

Input Ports

The binary format for fingerprints

Output Ports

Molecule name plus n number of bits

Views

Std output/error of Show Fingerprint
Std output/error of Show Fingerprint

Best Friends (Incoming)

Best Friends (Outgoing)

Update Site

To use this node in KNIME, install Schrödinger Nodes for Suite2018-1 from the following update site:

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