StarDist 2D
This component uses StarDist for segmentation of convex-shaped objects. It uses a slightly customized version of the ImageJ(2) plugin available at https://github.com/stardist/stardist-imagej.
If you are using this component, please see https://github.com/stardist/stardist for how to cite the original publications.
IMPORTANT: Read https://forum.image.sc/t/stardist-or-noise2voide-from-knime/39117/4 for installation instructions.
Options
Nodes
- Set Image Metadata3 ×
- String Manipulation (Variable)3 ×
- Chunk Loop Start2 ×
- Constant Value Column2 ×
- Dimension Swapper2 ×
- Don't Save End2 ×
- Don't Save Start2 ×
- Double Input2 ×
- Image Converter2 ×
- Image Cropper2 ×
- Loop End2 ×
- Math Formula (Variable)2 ×
- Column Appender1 ×
- Column Filter1 ×
- Column Rename1 ×
- Column Selection Configuration1 ×
- Dimension Extender1 ×
- Dump Stack1 ×
- Extract Column Header1 ×
- Image Features1 ×
- Image Normalizer1 ×
- Image to Labeling1 ×
- Insert Column Header1 ×
- Local File Browser Configuration1 ×
- Reference Row Filter1 ×
- RowID1 ×
- String Manipulation1 ×
- Table Row to Variable1 ×
- TensorFlow Network Executor1 ×
- TensorFlow Network Reader1 ×
Extensions
- FeatureKNIME Base nodes
- FeatureKNIME Deep Learning - TensorFlow Integration
- FeatureKNIME Image Processing
- FeatureKNIME Image Processing - ImageJ Integration (Beta)
- FeatureKNIME Javasnippet
- Show all 7 modules
Links
- No links available