StarDist 2D

This component uses StarDist for segmentation of convex-shaped objects. It uses a slightly customized version of the ImageJ(2) plugin available at https://github.com/stardist/stardist-imagej.

If you are using this component, please see https://github.com/stardist/stardist for how to cite the original publications.

IMPORTANT: Read https://forum.image.sc/t/stardist-or-noise2voide-from-knime/39117/4 for installation instructions.

Options

Segmentation column
Model for segmentation: Enter Description

Input Ports

: A table that contains an image for segmentation

Output Ports

: A table that contains two columns: The originally selected column and the StarDist segmentation

Nodes

Set Image Metadata3 ×
String Manipulation (Variable)3 ×
Chunk Loop Start2 ×
Component Input2 ×
Component Output2 ×
Show all 33 nodes

Extensions

FeatureKNIME Base nodes
FeatureKNIME Deep Learning - TensorFlow Integration
FeatureKNIME Image Processing
FeatureKNIME Image Processing - ImageJ Integration (Beta)
FeatureKNIME Javasnippet
Show all 7 modules