Labeling Filter

Filters the segments of a labeling according to some filter criteria like segment label, segment area, or whether the segment is touching the labeling border.

Options

Label Name

Excludes or includes a segment if the labels matches the given expression, respectively. The expression may contain wildcards, i.e. '*' (matching any sequence of characters) and '?' (matching any one character).

Segment Area

A segment will be included in the result labeling if the area is within the given interval.

Border Segments

Option to remove segments which are touching the border (no matter which dimension). Only the selected dimensions are considered to test whether segments are touching the border.

Speed-up

If it can be guaranteed that the input labeling does not contain overlapping segments, the calculation can be accelerated. If this option is checked but the input DOES contain overlapping segments might lead to unexpected results!

Column Selection

Column Creation Mode

Mode how to handle the selected column. The processed column can be added to a new table, appended to the end of the table, or the old column can be replaced by the new result

Column Suffix

A suffix appended to the column name. If "Append" is not selected, it can be left empty.

Column Selection

Selection of the columns to be processed.

Views

Image Viewer

Another, possibly interactive, view on table cells. Displays the selected cells with their associated viewer if it exists. Available views are:
- Histogram Viewer
-- This viewer shows the histogram of the currently selected image.
- Labeling View
-- View on a labeling/segmentation
- BigDataViewer
-- A viewer shown when the user selects an interval of rows and columns in the viewer. This viewer combines all images and labelings in the selected interval to one image by rendering them next to each other. Alternatively, the images and labelings can be layed over each other.
- XML
-- XML tree
- Image Viewer
-- This viewer renders the selected image-cell.
- Missing Value Viewer
-- An empty viewer that is shown when the input cell has no value to display.
- Combined View
-- A viewer shown when the user selects an interval of rows and columns in the viewer. This viewer combines all images and labelings in the selected interval to one image by rendering them next to each other. Alternatively, the images and labelings can be layed over each other.

Workflows

• 01_Count_CellsKNIME Hub
• 01_Spot_DetectionKNIME Hub
• 01_Spot_Detection modif KNIME Forum
• 01_Watershed_SegmentationKNIME Hub
• 02_Measure_DistancesKNIME Hub
• Show all 51 workflows

Links

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Developers