This node is currently not available in KNIME v5.4 — instead we’re showing this page for KNIME v5.2. You can use the version menu in the title bar to permanently switch your preferred version. This will also show the link to the update site.

Proteins Viewer

This Node Is Deprecated — This version of the node has been replaced with a new and improved version. The old version is kept for backwards-compatibility, but for all new workflows we suggest to use the version linked below.

Node to view proteins in a web browser

When view is opened then it will automatically open a web browser with the viewer.

Source code available at Github.

Options

Column with PDB molecules: Column with PDB or Mol2 formatted molecules in port 1.
Column with labels (*): Column with labels in port 1, if no column is selected uses Row ID.

Input Ports

: Table containing Proteins in PDB or Mol2 format

Output Ports

This node has no output ports

Popular Predecessors

Popular Successors

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Views

This node has no views

Workflows

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Developers

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Installation

To use this node in KNIME, install the extension 3D-e-Chem KNIME nodes from the below update site following our NodePit Product and Node Installation Guide:

v5.2

A zipped version of the software site can be downloaded here.

Plugin provider: Netherlands eScience Center

Plugin version: 2.0.3.v202311220951

On NodePit since: 2023-12-06

Last update: 2024-12-18

Tags: Deprecated

KNIME versions: v5.3, v5.2, v5.1, v4.7, v4.6, v4.5, v4.4, v4.3, v4.2, v4.1, v4.0, v3.7, v3.6

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