0 ×

SemanticValidator

Generic Workflow Nodes for KNIME: OpenMS version 2.4.0.201810261314 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

SemanticValidator for semantically validating certain XML files.

Web Documentation for SemanticValidator

Options

version
Version of the tool that generated this parameters file.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overwrite tool specific checks.
test
Enables the test mode (needed for internal use only)

Input Ports

Input file (any xml file) [analysisXML,mzML,TraML,mzid,mzData,xml]
Mapping file which is used to semantically validate the given XML file against this mapping file (see 'share/OpenMS/MAPPING' for templates). [xml]
Controlled Vocabulary files containg the CV terms (if left empty, a set of default files are used) [obo,opt.]

Views

SemanticValidator Std Output
The text sent to standard out during the execution of SemanticValidator.
SemanticValidator Error Output
The text sent to standard error during the execution of SemanticValidator. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Update Site

To use this node in KNIME, install Generic Workflow Nodes for KNIME: OpenMS from the following update site:

Wait a sec! You want to explore and install nodes even faster? We highly recommend our NodePit for KNIME extension for your KNIME Analytics Platform.