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Resampler

Generic Workflow Nodes for KNIME: OpenMS version 2.5.0.202002201806 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Transforms an LC/MS map into a resampled map or a PNG image.

Web Documentation for Resampler

Options

version
Version of the tool that generated this parameters file.
sampling_rate
New sampling rate in m/z dimension (in Th unless ppm flag is set)
ppm
sampling_rate is given in ppm
align_sampling
Ensures that sampling is performed equally across the map (same raster is used for all spectra)
min_int_cutoff
Intensity cutoff for peaks to be stored in output spectrum (only peaks above this cutoff will be stored, -1 means store all data)
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overwrite tool specific checks.
test
Enables the test mode (needed for internal use only)

Input Ports

Icon
input file [mzML]

Output Ports

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output file in mzML format [mzML]

Views

Resampler Std Output
The text sent to standard out during the execution of Resampler.
Resampler Error Output
The text sent to standard error during the execution of Resampler. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Installation

To use this node in KNIME, install OpenMS from the following update site:

KNIME 4.2
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Developers

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