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Predicts retention times for peptides using a model trained by RTModel.
Options
Input Ports
- Peptides with precursor information [idXML,opt.]
- Peptides as text-based file [txt,opt.]
- input file with additional model parameters when using the OLIGO kernel [paramXML,opt.]
- input file with the used training dataset when using the OLIGO kernel [txt,opt.]
- svm model in libsvm format (can be produced by RTModel) [txt]
Output Ports
- Output file with peptide RT prediction [idXML]
- Output file in idXML format containing positive predictions for peptide separation prediction - requires 'out_id:negative' to be present as well. [idXML]
- Output file in idXML format containing negative predictions for peptide separation prediction - requires 'out_id:positive' to be present as well. [idXML]
- Output file with predicted RT values [csv]
Views
- RTPredict Std Output
- The text sent to standard out during the execution of RTPredict.
- RTPredict Error Output
- The text sent to standard error during the execution of RTPredict. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)
Workflows
- No workflows found
Links
- No links available
Developers
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