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OpenSwathFileSplitter

Generic Workflow Nodes for KNIME: OpenMS version 2.6.0.202009301213 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Splits SWATH files into n files, each containing one window.

Web Documentation for OpenSwathFileSplitter

Options

version
Version of the tool that generated this parameters file.
outputDirectory
Output path to store the split files
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overrides tool-specific checks
test
Enables the test mode (needed for internal use only)

Input Ports

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Input file (SWATH/DIA file) [mzML,mzXML]

Output Ports

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Optional QC meta data (charge distribution in MS1). Only works with mzML input files. [json]

Views

OpenSwathFileSplitter Std Output
The text sent to standard out during the execution of OpenSwathFileSplitter.
OpenSwathFileSplitter Error Output
The text sent to standard error during the execution of OpenSwathFileSplitter. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Installation

To use this node in KNIME, install OpenMS from the following update site:

KNIME 4.2
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Developers

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