IDConflictResolver

Resolves ambiguous annotations of features with peptide identifications

Web Documentation for IDConflictResolver

Options

version
Version of the tool that generated this parameters file.
resolve_between_features
A map may contain multiple features with both identical (possibly modified i.e. not stripped) sequence and charge state. The feature with the 'highest intensity' is very likely the most reliable one. When switched on, the filter removes the sequence annotation from the lower intensity features, thereby resolving the multiplicity. Only the most reliable features for each (possibly modified i.e. not stripped) sequence maintain annotated with this peptide sequence.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overrides tool-specific checks
test
Enables the test mode (needed for internal use only)

Input Ports

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Input file (data annotated with identifications) [featureXML,consensusXML]

Output Ports

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Output file (data with one peptide identification per feature) [featureXML,consensusXML]

Views

IDConflictResolver Std Output
The text sent to standard out during the execution of IDConflictResolver.
IDConflictResolver Error Output
The text sent to standard error during the execution of IDConflictResolver. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

Further Links

Developers

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