IconMultiplexResolver0 ×

Generic Workflow Nodes for KNIME: OpenMS version 2.3.0.201712211252 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Completes peptide multiplets and resolves conflicts within them.

Web Documentation for MultiplexResolver

Options

version
Version of the tool that generated this parameters file.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overwrite tool specific checks.
test
Enables the test mode (needed for internal use only)
labels
Labels used for labelling the samples. [...] specifies the labels for a single sample. For example [][Lys8,Arg10] ... SILAC [][Lys4,Arg6][Lys8,Arg10] ... triple-SILAC [Dimethyl0][Dimethyl6] ... Dimethyl [Dimethyl0][Dimethyl4][Dimethyl8] ... triple Dimethyl [ICPL0][ICPL4][ICPL6][ICPL10] ... ICPL
missed_cleavages
Maximum number of missed cleavages due to incomplete digestion. (Only relevant if enzymatic cutting site coincides with labelling site. For example, Arg/Lys in the case of trypsin digestion and SILAC labelling.)
mass_tolerance
Mass tolerance in Da for matching the detected to the theoretical mass shifts.
Arg6
Label:13C(6) | C(-6) 13C(6) | unimod #188
Arg10
Label:13C(6)15N(4) | C(-6) 13C(6) N(-4) 15N(4) | unimod #267
Lys4
Label:2H(4) | H(-4) 2H(4) | unimod #481
Lys6
Label:13C(6) | C(-6) 13C(6) | unimod #188
Lys8
Label:13C(6)15N(2) | C(-6) 13C(6) N(-2) 15N(2) | unimod #259
Leu3
Label:2H(3) | H(-3) 2H(3) | unimod #262
Dimethyl0
Dimethyl | H(4) C(2) | unimod #36
Dimethyl4
Dimethyl:2H(4) | 2H(4) C(2) | unimod #199
Dimethyl6
Dimethyl:2H(4)13C(2) | 2H(4) 13C(2) | unimod #510
Dimethyl8
Dimethyl:2H(6)13C(2) | H(-2) 2H(6) 13C(2) | unimod #330
ICPL0
ICPL | H(3) C(6) N O | unimod #365
ICPL4
ICPL:2H(4) | H(-1) 2H(4) C(6) N O | unimod #687
ICPL6
ICPL:13C(6) | H(3) 13C(6) N O | unimod #364
ICPL10
ICPL:13C(6)2H(4) | H(-1) 2H(4) 13C(6) N O | unimod #866

Input Ports

Peptide multiplets with assigned sequence information [consensusXML]

Output Ports

Complete peptide multiplets. [consensusXML]
Optional output containing peptide multiplets without ID annotation or with conflicting quant/ID information. [consensusXML,Inactive]

Views

MultiplexResolver Std Output
The text sent to standard out during the execution of MultiplexResolver.
MultiplexResolver Error Output
The text sent to standard error during the execution of MultiplexResolver. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Best Friends (Outgoing)

Update Site

To use this node in KNIME, install Generic Workflow Nodes for KNIME: OpenMS from the following update site:

Wait a sec! You want to explore and install nodes even faster? We highly recommend our NodePit for KNIME extension for your KNIME Analytics Platform.