0 ×

FeatureLinkerLabeled

Generic Workflow Nodes for KNIME: OpenMS version 2.5.0.202002201806 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Groups corresponding isotope-labeled features in a feature map.

Web Documentation for FeatureLinkerLabeled

Options

version
Version of the tool that generated this parameters file.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overwrite tool specific checks.
test
Enables the test mode (needed for internal use only)
rt_estimate
If 'true' the optimal RT pair distance and deviation are estimated by fitting a gaussian distribution to the histogram of pair distance. Note that this works only datasets with a significant amount of pairs! If 'false' the parameters 'rt_pair_dist', 'rt_dev_low' and 'rt_dev_high' define the optimal distance.
rt_pair_dist
optimal pair distance in RT [sec] from light to heavy feature
rt_dev_low
maximum allowed deviation below optimal retention time distance
rt_dev_high
maximum allowed deviation above optimal retention time distance
mz_pair_dists
optimal pair distances in m/z [Th] for features with charge +1 (adapted to +2, +3, .. by division through charge)
mz_dev
maximum allowed deviation from optimal m/z distance
mrm
this option should be used if the features correspond mrm chromatograms (additionally the precursor is taken into account)

Input Ports

Input file [featureXML]

Output Ports

Output file [consensusXML]

Views

FeatureLinkerLabeled Std Output
The text sent to standard out during the execution of FeatureLinkerLabeled.
FeatureLinkerLabeled Error Output
The text sent to standard error during the execution of FeatureLinkerLabeled. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Best Friends (Outgoing)

Installation

To use this node in KNIME, install OpenMS from the following update site:

KNIME 4.2
Wait a sec! You want to explore and install nodes even faster? We highly recommend our NodePit for KNIME extension for your KNIME Analytics Platform.

Developers

You want to see the source code for this node? Click the following button and we’ll use our super-powers to find it for you.