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ExternalCalibration

Generic Workflow Nodes for KNIME: OpenMS version 2.5.0.202002201806 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Applies an external mass recalibration.

Web Documentation for ExternalCalibration

Options

version
Version of the tool that generated this parameters file.
offset
Mass offset in ppm
slope
Slope (dependent on m/z)
power
Power (dependent on m/z)
ms_level
Target MS levels to apply the transformation onto. Scans with other levels remain unchanged.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overwrite tool specific checks.
test
Enables the test mode (needed for internal use only)

Input Ports

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Input peak file [mzML]

Output Ports

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Output file [mzML]

Views

ExternalCalibration Std Output
The text sent to standard out during the execution of ExternalCalibration.
ExternalCalibration Error Output
The text sent to standard error during the execution of ExternalCalibration. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Installation

To use this node in KNIME, install OpenMS from the following update site:

KNIME 4.2
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Developers

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