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DTAExtractor

Generic Workflow Nodes for KNIME: OpenMS version 2.5.0.202002201806 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Extracts spectra of an MS run file to several files in DTA format.

Web Documentation for DTAExtractor

Options

version
Version of the tool that generated this parameters file.
out
base name of DTA output files (RT, m/z and extension are appended)
mz
m/z range of precursor peaks to extract. This option is ignored for MS level 1
rt
retention time range of spectra to extract
level
MS levels to extract
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overwrite tool specific checks.
test
Enables the test mode (needed for internal use only)

Input Ports

Icon
input file [mzML]

Views

DTAExtractor Std Output
The text sent to standard out during the execution of DTAExtractor.
DTAExtractor Error Output
The text sent to standard error during the execution of DTAExtractor. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Installation

To use this node in KNIME, install OpenMS from the following update site:

KNIME 4.2
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Developers

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