This node is currently not available in KNIME v5.4 — instead we’re showing this page for KNIME v4.7. You can use the version menu in the title bar to permanently switch your preferred version. This will also show the link to the update site.

FASTA Writer

Node can be used to convert a table containing headers, comments, and sequences into a single FASTA file. If > signs are missing in headers they are automatically added (as missing ; signs in comments). The sequence is converted to uppercase and saved in lines with 80 chars length

Options

Column containing the header: The FASTA header
Comment: Column containing the (optional) comment
Sequence: Column containing the sequence

Input Ports

: Table containing 3 String columns for header, comments, and sequence

Output Ports

This node has no output ports

Views

This node has no views

Workflows

No workflows found

Developers

You want to see the source code for this node? Click the following button and we’ll use our super-powers to find it for you.

Installation

To use this node in KNIME, install the extension HTS Data Mining from the below update site following our NodePit Product and Node Installation Guide:

v4.7

A zipped version of the software site can be downloaded here.

Plugin provider: Martin Neuenschwander

Plugin version: 1.2.0.v202006241503

On NodePit since: 2022-12-06

Last update: 2024-12-16

KNIME versions: From v4.0 to v4.7

Deploy, schedule, execute, and monitor your KNIME workflows locally, in the cloud or on-premises – with our brand new NodePit Runner.

Try NodePit Runner!