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FASTA Writer

EU-OPENSCREEN-Node extension for KNIME Workbench version 1.2.0.v202006241503 by Martin Neuenschwander

Node can be used to convert a table containing headers, comments, and sequences into a single FASTA file. If > signs are missing in headers they are automatically added (as missing ; signs in comments). The sequence is converted to uppercase and saved in lines with 80 chars length

Options

Column containing the header: The FASTA header
Comment: Column containing the (optional) comment
Sequence: Column containing the sequence

Input Ports

: Table containing 3 String columns for header, comments, and sequence

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Installation

To use this node in KNIME, install HTS Data Mining from the following update site:

KNIME 4.3

A zipped version of the software site can be downloaded here.

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Developers

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