0 ×

FASTA Writer

EU-OPENSCREEN-Node extension for KNIME Workbench version 1.2.0.v202006241503 by Martin Neuenschwander

Node can be used to convert a table containing headers, comments, and sequences into a single FASTA file. If > signs are missing in headers they are automatically added (as missing ; signs in comments). The sequence is converted to uppercase and saved in lines with 80 chars length

Options

Column containing the header
The FASTA header
Comment
Column containing the (optional) comment
Sequence
Column containing the sequence

Input Ports

Icon
Table containing 3 String columns for header, comments, and sequence

Best Friends (Incoming)

Installation

To use this node in KNIME, install HTS Data Mining from the following update site:

KNIME 4.3

A zipped version of the software site can be downloaded here.

You don't know what to do with this link? Read our NodePit Product and Node Installation Guide that explains you in detail how to install nodes to your KNIME Analytics Platform.

Wait a sec! You want to explore and install nodes even faster? We highly recommend our NodePit for KNIME extension for your KNIME Analytics Platform. Browse NodePit from within KNIME, install nodes with just one click and share your workflows with NodePit Space.

Developers

You want to see the source code for this node? Click the following button and we’ll use our super-powers to find it for you.