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FASTA Reader

EU-OPENSCREEN-Node extension for KNIME Workbench version 1.2.0.v202006241503 by Martin Neuenschwander

This node can be used to read data from a FASTA file. The input file may be a single or multiple sequence file, each entry of the input file is represented by one row in the output table. The output table consists of two columns, one for the header or description and one for the nucleotide or peptide sequence.

Blank lines as well as comment lines (starting with a semicolon) will be ignored.

Options

Input File:
Enter a valid file name or URL. You can also choose a previously read file from the drop-down list, select a file from the "Browse..." dialog or assign a flow variable representing the target file using the variable button on the right.

Output Ports

Icon
Data from FASTA file

Best Friends (Outgoing)

Installation

To use this node in KNIME, install HTS Data Mining from the following update site:

KNIME 4.3

A zipped version of the software site can be downloaded here.

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Developers

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