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FASTA Reader

This node can be used to read data from a FASTA file. The input file may be a single or multiple sequence file, each entry of the input file is represented by one row in the output table. The output table consists of two columns, one for the header or description and one for the nucleotide or peptide sequence.

Blank lines as well as comment lines (starting with a semicolon) will be ignored.

Options

Input File:: Enter a valid file name or URL. You can also choose a previously read file from the drop-down list, select a file from the "Browse..." dialog or assign a flow variable representing the target file using the variable button on the right.

Input Ports

This node has no input ports

Output Ports

: Data from FASTA file

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Installation

To use this node in KNIME, install the extension HTS Data Mining from the below update site following our NodePit Product and Node Installation Guide:

v4.7

A zipped version of the software site can be downloaded here.

Plugin provider: Martin Neuenschwander

Plugin version: 1.2.0.v202006241503

On NodePit since: 2022-12-06

Last update: 2024-12-09

KNIME versions: From v4.0 to v4.7

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