BLAST

Search a protein sequence database using BLAST
Note: To enable web-based searching, please ensure the option "Allow use of web server for BLAST searches" found in the Jobs panel of Maestro preferences, has been checked.

Backend implementation

scripts/blastCLI.py run by cmdRunner.py
The script blastCLI.py is passed to cmdRunner.py to implement this node.

Options

Include Log in output
Include the BLAST log file in the output
Database
The database that will be searched (PDB or NR)
Location
Whether to run Blast local (via downloaded or standard blast databases) or remote ( via web connection to NCBI )
Filter query sequence
Filter query sequence to remove low-complexity regions
Expand non-redundant hits
Expand non-redundant BLAST hits by showing additional PDB sequences that are identical to the original hit

Input Ports

Icon
Sequences in Maestro format

Output Ports

Icon
BLAST alignments in Maestro format

Views

This node has no views

Workflows

Links

Developers

You want to see the source code for this node? Click the following button and we’ll use our super-powers to find it for you.