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Sequence Writer

Write sequences in FASTA or Maestro format. The output format is determined by the file extension.

Backend implementation

utilities/seqconvert
seqconvert is used to convert Maestro Sequence format into FASTA output (if necessary)

Options

Column containing sequences: Select the column in the input data table that contains the sequence data. This only applies to input data tables that contain more than one sequence column.
Overwrite existing files: If any output file exists, this node fails.
Write all sequences: Whether all input rows are written
Start: The start row specified if all sequences are not written.
End: Write to the last row if all input rows are not written.
Total: The number of rows written if all sequences are not written and the "End" option is not selected.

Input Ports

: Sequences in Maestro format

Output Ports

This node has no output ports

Popular Predecessors

Popular Successors

BLAST100 %

Views

Std out/err of Sequence Writer: Std out/err of Sequence Writer

Workflows

Developers

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Installation

To use this node in KNIME, install the extension Schrödinger Extensions for KNIME from the below update site following our NodePit Product and Node Installation Guide:

v5.2

A zipped version of the software site can be downloaded here.

Plugin provider: Schrödinger

Plugin version: 24.3.138.v202407300410

On NodePit since: 2023-12-06

Last update: 2024-11-20

KNIME versions: v5.2, v5.1, v4.7, v4.6, v4.5, v4.4, v4.3, v4.2, v4.1, v4.0, v3.7, v3.6

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