0 ×

Sequence Reader

Schrödinger extension for KNIME Workbench version by Schrödinger

Read sequences in Maestro for FASTA format. The input format is determined by the file extension.

Backend implementation

seqconvert is used to convert FASTA input to Maestro Sequence format (if necessary)


Sequence file
Sequence file to be loaded
File can be an URL like:
knime://LOCAL/path/to/file - knime://LOCAL refers to the current workspace
knime://knime.workflow/path/to/file - knime://knime.workspace refers to the current workflow
Load all sequences into one cell
Read sequences into one table row/cell; the default is to store at most one sequence per row
Import all Sequence
Whether the entire file should be loaded
If not all sequences are loaded, which number sequence, should loader start at (disabled if Import all Sequence is set)
Should the file be loaded until to end (disabled if Import all Sequence is set)
If not all sequences are imported and not loaded until the end, how many total sequences should be loaded (disabled if Import all sequences or End is set)

Output Ports

Sequences in Maestro format

Best Friends (Outgoing)



To use this node in KNIME, install Schrödinger Extensions for KNIME from the following update site:


You don't know what to do with this link? Read our NodePit Product and Node Installation Guide that explains you in detail how to install nodes to your KNIME Analytics Platform.

Wait a sec! You want to explore and install nodes even faster? We highly recommend our NodePit for KNIME extension for your KNIME Analytics Platform. Browse NodePit from within KNIME, install nodes with just one click and share your workflows with NodePit Space.


You want to see the source code for this node? Click the following button and we’ll use our super-powers to find it for you.