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Sequence Reader

Schrödinger extension for KNIME Workbench version 21.1.156.202102141445 by Schrödinger

Read sequences in Maestro for FASTA format. The input format is determined by the file extension.

Backend implementation

utilities/seqconvert
seqconvert is used to convert FASTA input to Maestro Sequence format (if necessary)

Options

Sequence file
Sequence file to be loaded
File can be an URL like:
knime://LOCAL/path/to/file - knime://LOCAL refers to the current workspace
knime://knime.workflow/path/to/file - knime://knime.workspace refers to the current workflow
Load all sequences into one cell
Read sequences into one table row/cell; the default is to store at most one sequence per row
Import all Sequence
Whether the entire file should be loaded
Start
If not all sequences are loaded, which number sequence, should loader start at (disabled if Import all Sequence is set)
End
Should the file be loaded until to end (disabled if Import all Sequence is set)
Total
If not all sequences are imported and not loaded until the end, how many total sequences should be loaded (disabled if Import all sequences or End is set)

Output Ports

Icon
Sequences in Maestro format

Best Friends (Outgoing)

Workflows

Installation

To use this node in KNIME, install Schrödinger Extensions for KNIME from the following update site:

KNIME 4.3

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Developers

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