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Protein Preparation and Refinement
This category contains 10 nodes.
BLAST
Search a protein sequence database using BLAST
Induced Fit Docking
Set up a sequence of jobs in which ligands are docked with Glide, then Prime Refinement is used to allow the receptor to relax, and the ligands are […]
Prime Build Homology Model
Build homology models
Prime Energy
Evaluate the energy and its components for one or more proteins
Prime Minimization
Minimize molecules using Prime
Prime Refine Loops
Refine the structure of loops in the input protein
Prime Side Chain Sampling
Refines protein structures via side chain prediction
Protein Assignment
Assign chi angles in residues and orientation of waters.
Protein Preparation Workflow
Set up and run the protein preparation.
Residue Scanning
Bioluminate residue scanning: Mutates and refines residues and proteins