Icon

celltox-green

TODO We need to replacethe rounding with valueextraction from the D300 file Grouping into top and bottom half (usually used to separate backfill / no backfill) Join concentration andreadout based onplate informationInput XML from D300Input Excel from BMGRename columnsto x and yRemove controlsRound concentrationsfit-inputsRemove duplicate columnsfitraw-inputsRemove wellsat edge of plateHACK: Plate IDRemove DMSOfrom backfill based on 0 concentration(not name)Top: Top seriesBottom: Bottom seriesDefine seriesDefine seriesCreate ID fromfluid name and seriesCreate ID fromfluid name and seriesJoiner File Upload File Upload Column Rename Row Filter read-bmg-xlsx-single-timepoint read-d300-xml Round Double Fit Hill with SE ContainerOutput (JSON) Table to JSON Column Filter ContainerOutput (JSON) Table to JSON ContainerOutput (JSON) Table to JSON GroupBy Column Rename GroupBy Column Rename Compute fold change Split Well column Rule-basedRow Filter Variable toTable Row Column Rename Cross Joiner Integer Input Rule-basedRow Filter Determine 0 values Massage controlcolumn Row Splitter ConstantValue Column ConstantValue Column Concatenate Column Aggregator Column Aggregator TODO We need to replacethe rounding with valueextraction from the D300 file Grouping into top and bottom half (usually used to separate backfill / no backfill) Join concentration andreadout based onplate informationInput XML from D300Input Excel from BMGRename columnsto x and yRemove controlsRound concentrationsfit-inputsRemove duplicate columnsfitraw-inputsRemove wellsat edge of plateHACK: Plate IDRemove DMSOfrom backfill based on 0 concentration(not name)Top: Top seriesBottom: Bottom seriesDefine seriesDefine seriesCreate ID fromfluid name and seriesCreate ID fromfluid name and seriesJoiner File Upload File Upload Column Rename Row Filter read-bmg-xlsx-single-timepoint read-d300-xml Round Double Fit Hill with SE ContainerOutput (JSON) Table to JSON Column Filter ContainerOutput (JSON) Table to JSON ContainerOutput (JSON) Table to JSON GroupBy Column Rename GroupBy Column Rename Compute fold change Split Well column Rule-basedRow Filter Variable toTable Row Column Rename Cross Joiner Integer Input Rule-basedRow Filter Determine 0 values Massage controlcolumn Row Splitter ConstantValue Column ConstantValue Column Concatenate Column Aggregator Column Aggregator

Nodes

Extensions

Links

Download

To use this workflow in KNIME, download it from the below URL and open it in KNIME:

Download Workflow
Created by: helfrich
Created at: 2020-05-26
On NodePit since: 2024-11-19
Last update: 2024-12-21
Created with KNIME version: v4.2.4

Deploy, schedule, execute, and monitor your KNIME workflows locally, in the cloud or on-premises – with our brand new NodePit Runner.

Try NodePit Runner!