Sequence Converter

Converts sequence formats.
Runs utilities/seqconvert

Options

Read an alignment in the input file
Use ATOM (not SEQRES) records with PDB files
Start : read from this sequence in the input file
Reads from this sequence in the input file
End : read to (and including) this sequence in the input file
Reads to (and including) this sequence in the input file
Total : read at most this number of sequences
Reads maximum this number of sequnces
Input
Input file format
Output
Output file format

Input Ports

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Input in native (Schrödinger), FASTA , PDB, NBRF-PIR, TEXT-PLAIN, GCG, SWISS-PROT, GENBANK, NCBI, PHYLIP, NEXUS-PAUP, SELEX, STADEN, PFAM-STOCKHOLM, CASP format.

Output Ports

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Output in native (Schrödinger), FASTA, NBRF-PIR, TEXT-PLAIN, GCG format, SWISS-PROT, CASP, GENBANK format

Nodes

Extensions

Links

Download

To use this component in KNIME, download it from the below URL and open it in KNIME:

Download Component
On NodePit since: 2020-08-12
Last update: 2024-05-02
Created with KNIME version: v4.1.1

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