03_​Run PyMOL

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Display structure in PyMOL. Run PyMOL commands and save the modified structures. Raytrace views and save the images.

[Requires: only the free plugin: https://www.schrodinger.com/SchrodingerKNIMEFreeNodes. No Schrodinger installation]

Nodes

• Java Edit Variable (simple)5 ×
• Run PyMOL4 ×
• RowID3 ×
• Joiner2 ×
• Loop End2 ×
• Mol2 Reader2 ×
• Read Images2 ×
• Table Viewer2 ×
• Variable to Table Row2 ×
• Chunk Loop Start1 ×
• Constant Value Column1 ×
• Image to Report1 ×
• Java Snippet (simple)1 ×
• List Files1 ×
• Mol2 Writer1 ×
• PDB Downloader1 ×
• PDB Property Extractor1 ×
• SDF Inserter1 ×
• SDF Reader1 ×
• Table Creator1 ×
• Table Row To Variable Loop Start1 ×
• Table Row to Variable1 ×
• Table To Image1 ×
• Variable to Table Column1 ×

Extensions

• FeatureKNIME Base Chemistry Types & Nodes
• FeatureKNIME Base nodes
• FeatureKNIME Javasnippet
• FeatureKNIME SVG Support
• FeatureVernalis KNIME Nodes

Links

• No links available