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CmdwInput

NGS related nodes for KNIME Workbench version 0.2.200.qualifier by Bernd Jagla, Institute Pasteur

Executes a given command on the command line. On *.nix systems pipes are allowed. When using quotes (") use "" instead

Please see also notes for Bash node.

Options

command
command to be executed
path
working directory where command should be executed
propagate error
sometimes it is useful to not propagate stdand error message. I.e. if the std err is being used to display other information than error messages (e.g. bowtie). If selected any output on std err will result in failure of the node and prohibit following nodes to being executed

Input Ports

Icon
input data has to have at least one string column

Output Ports

Icon
Standard output
Icon
Standard error

Best Friends (Incoming)

Best Friends (Outgoing)

Workflows

Installation

To use this node in KNIME, install KNIME NGS tools from the following update site:

KNIME 4.2

A zipped version of the software site can be downloaded here.

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Developers

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