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CmdwInput

Executes a given command on the command line. On *.nix systems pipes are allowed. When using quotes (") use "" instead

Please see also notes for Bash node.

Options

command: command to be executed
path: working directory where command should be executed
propagate error: sometimes it is useful to not propagate stdand error message. I.e. if the std err is being used to display other information than error messages (e.g. bowtie). If selected any output on std err will result in failure of the node and prohibit following nodes to being executed

Input Ports

: input data has to have at least one string column

Output Ports

: Standard output
: Standard error

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Workflows

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Installation

To use this node in KNIME, install the extension KNIME NGS tools from the below update site following our NodePit Product and Node Installation Guide:

v4.6

A zipped version of the software site can be downloaded here.

Plugin provider: Bernd Jagla, Institute Pasteur

Plugin version: 0.2.300.qualifier

On NodePit since: 2022-06-11

Last update: 2024-12-13

KNIME versions: From v3.6 to v4.6

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