Sugar Remover

This node removes all the sugars present in the structure of a compound. The sugar can be terminal or connect other substructures and in that case, all the substructures with more than 5 bonds are kept.

Options

Molecule column
Select the column containing the molecular structure.
Append Column
Appends a new molecule column (with the name as specified in the text field) if checked, replaces the original column otherwise.

Input Ports

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Table containing molecular structures

Output Ports

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As input but with structure without sugars

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Installation

To use this node in KNIME, install the extension KNIME-CDK from the below update site following our NodePit Product and Node Installation Guide:

v5.2

A zipped version of the software site can be downloaded here.

Plugin provider: KNIME GmbH, Konstanz and EMBL-EBI, Cambridge
Plugin version: 1.5.700.v202307261251
On NodePit since: 2023-12-06
Last update: 2024-04-19
KNIME versions: v5.2, v5.1, v4.7, v4.6, v4.5, v4.4, v4.3, v4.2, v4.1, v4.0, v3.7, v3.6

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