Cell Clump Splitter (Deprecated)

Options

Minimum Value of a Local Maxima

Ignore local maxima values that lie below this value.

Ignore Percentage

Ignore local maxima values below the percentage of the average value of local maximas of the clumped cell. Value is between 0 and 1.

Neighboorhood

Neighborhood definition. Ignore local maxima whice have a local maxima in their radius.

• EIGHT: check Neighboors within radius 1
• SIXTEEN: check Neighboors within radius 2.
• THIRTYTWO: check Neighboors within radius 3.

Maximum Number of Iterations

Number of iterations of the performed EM algorithm.

Column Selection

Column Creation Mode

Mode how to handle the selected column. The processed column can be added to a new table, appended to the end of the table, or the old column can be replaced by the new result

Column Suffix

A suffix appended to the column name. If "Append" is not selected, it can be left empty.

Column Selection

Selection of the columns to be processed.

Views

Image Viewer

Another, possibly interactive, view on table cells. Displays the selected cells with their associated viewer if it exists. Available views are:
- Labeling View
-- View on a labeling/segmentation
- Image Viewer
-- This viewer renders the selected image-cell.
- Combined View
-- A viewer shown when the user selects an interval of rows and columns in the viewer. This viewer combines all images and labelings in the selected interval to one image by rendering them next to each other. Alternatively, the images and labelings can be layed over each other.
- XML
-- XML tree
- BigDataViewer
-- A viewer shown when the user selects an interval of rows and columns in the viewer. This viewer combines all images and labelings in the selected interval to one image by rendering them next to each other. Alternatively, the images and labelings can be layed over each other.
- Missing Value Viewer
-- An empty viewer that is shown when the input cell has no value to display.
- Histogram Viewer
-- This viewer shows the histogram of the currently selected image.

Workflows

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Links

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Developers