Image Segment Features

Calculate features of an image under consideration of a given labeling. e.g.: Calculate each selected feature for each individual segment.

Options

Features

Tamura

• Calculates 6 Tamura features: Granularity, Contrast, Kurtosis of Directionality Standard Deviation of Directionality, Maximal directionality, Skewness

Segment Geometry

• Basic geometric properties: e.g. size, perimeter, centroid, circulartiy, convexity, diameter, ...

First order statistics

• Calculates the moments of the first order statistics. The following features are computed: Min, Max, Mean, Geometric Mean, Sum, Square of Sums, Standard Deviation, Variance, Skewness, Kurtosis, Quantil25, Quantil50, Quantil75, user defined Quantil, Histogram. Please note that the Geometric Mean can only be computed on unsigned datatypes. Invalid calculations (i.e. NaN) result in missing cells.

Haralick

• Statistical features based on gray-level co-occurrence matrix. Rotation invariance can be reached by averaging over the four directional co-occurrence matrices (activate 'compute average'). See http://murphylab.web.cmu.edu/publications/boland/boland_node26.html for more information.

Segment Settings

Append labels of overlapping segments

If true, the labels of overlapping segments will be appended in an additional column (';'-separated).

Overlapping segments do NOT need to completely overlap

If selected, segments will also be counted as overlapping, if so don't overlap completely.

Append segment information

If selected, additional information of each segment will be add (e.g. bitmask, source labeling, label). Useful, e.g., if the resulting segment table should be composed again to a labeling (e.g. using the GroupBy-node).

Filter on segment labels

Only labels which hold the given rule considered during the calculation.

Filter overlapping segment labels

Only the labels that comply with the specified rules will appear in the list of overlapping labels.

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Workflows

• 01_Spot_DetectionKNIME Hub
• 01_Spot_Detection modif KNIME Forum
• 01_TrackmateKNIME Hub
• 02_Advanced_Setup_Part_1KNIME Hub
• 03_Advanced_Setup_Part_2KNIME Hub
• Show all 48 workflows

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