StreamableKNIME Image Types and Nodes version 1.8.3.202012050717 by University of Konstanz
Waehlby Cell Clump Splitter performs object split and merge by shape on a labeling. This may greatly improve quality of a labeling, especially for cell segmentation.
If your Image contains a lot of holes, you may want to consider preprocessing the input with the "Fill Holes" node or other kinds of hole filling.
The method used was mainly inspired by a paper by C. Waehlby, "Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections", and the method use by CellCognition (cellcognition.org).
Mode how to handle the selected column. The processed column can be added to a new table, appended to the end of the table, or the old column can be replaced by the new result
To use this node in KNIME, install KNIME Image Processing from the following update site:
A zipped version of the software site can be downloaded here.
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