0 ×

Pharmacophore to molecule

KNIME nodes to read/write pharmacophore files and align them version 1.0.4.v201909241614 by Netherlands eScience Center

Generate molecule from pharmacophore by mapping pharmacophore points to atoms. The generate molecule will not contain the alpha and normal information.


Pharmacophore column
Column with pharmacophores
Pharmacophore type 2 element mapping
Mapping of each pharmacophore type to an element.

Input Ports

Table with the pharmacophores

Output Ports

Table with Pharmacophore as molecule as extra column

Best Friends (Incoming)

Best Friends (Outgoing)


To use this node in KNIME, install 3D-e-Chem KNIME nodes from the following update site:


You don't know what to do with this link? Read our NodePit Product and Node Installation Guide that explains you in detail how to install nodes to your KNIME Analytics Platform.

Wait a sec! You want to explore and install nodes even faster? We highly recommend our NodePit for KNIME extension for your KNIME Analytics Platform. Browse NodePit from within KNIME, install nodes with just one click and share your workflows with NodePit Space.


You want to see the source code for this node? Click the following button and we’ll use our super-powers to find it for you.