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GPCRDB Protein similarity

Get similarity of query against subjects

Options

Advanced Options

Chunk size: Number of subjects fetched within a single webservice fetch, If nr of subjects is greater than chunk size then multiple requests will be made.
Base path: Url to use as base path for GPCRDB webservice
Timeout: Timeout in seconds to wait for GPCRDB webservice response

Input Ports

: Table with Uniprot identifier as queries
: Table with Uniprot identifier as subjects

Output Ports

: GPCRDB protein similarity pairs

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Installation

To use this node in KNIME, install the extension 3D-e-Chem KNIME nodes from the below update site following our NodePit Product and Node Installation Guide:

v5.2

A zipped version of the software site can be downloaded here.

Plugin provider: Netherlands eScience Center

Plugin version: 1.4.3.v202311211210

On NodePit since: 2023-12-06

Last update: 2025-07-03

KNIME versions: v5.3, v5.2, v5.1, v4.7, v4.6, v4.5, v4.4, v4.3, v4.2, v4.1, v4.0, v3.7, v3.6

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