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GPCRDB Protein similarity

GPCRDB Nodes version 1.4.1.v201906270650 by Netherlands eScience Center

Get similarity of query against subjects

Options

Advanced Options

Chunk size: Number of subjects fetched within a single webservice fetch, If nr of subjects is greater than chunk size then multiple requests will be made.
Base path: Url to use as base path for GPCRDB webservice
Timeout: Timeout in seconds to wait for GPCRDB webservice response

Input Ports

: Table with Uniprot identifier as queries
: Table with Uniprot identifier as subjects

Output Ports

: GPCRDB protein similarity pairs

Best Friends (Incoming)

Row Filter (50 %) Streamable
PDB Reader (25 %)
Table Creator (25 %)

Best Friends (Outgoing)

Pivoting (100 %)

Installation

To use this node in KNIME, install 3D-e-Chem KNIME nodes from the following update site:

KNIME 4.1

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Developers

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