GPCRDB Protein similarity

Get similarity of query against subjects

Options

Advanced Options

Chunk size
Number of subjects fetched within a single webservice fetch, If nr of subjects is greater than chunk size then multiple requests will be made.
Base path
Url to use as base path for GPCRDB webservice
Timeout
Timeout in seconds to wait for GPCRDB webservice response

Input Ports

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Table with Uniprot identifier as queries
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Table with Uniprot identifier as subjects

Output Ports

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GPCRDB protein similarity pairs

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Installation

To use this node in KNIME, install the extension 3D-e-Chem KNIME nodes from the below update site following our NodePit Product and Node Installation Guide:

v4.4

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Plugin provider: Netherlands eScience Center
Plugin version: 1.4.2.v202004060755
On NodePit since: 2021-07-02
Last update: 2021-10-15
KNIME versions: Since v3.6