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GPCRDB Protein similarity

Get similarity of query against subjects

Options

Advanced Options

Chunk size: Number of subjects fetched within a single webservice fetch, If nr of subjects is greater than chunk size then multiple requests will be made.
Base path: Url to use as base path for GPCRDB webservice
Timeout: Timeout in seconds to wait for GPCRDB webservice response

Input Ports

: Table with Uniprot identifier as queries
: Table with Uniprot identifier as subjects

Output Ports

: GPCRDB protein similarity pairs

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Installation

To use this node in KNIME, install the extension 3D-e-Chem KNIME nodes from the below update site following our NodePit Product and Node Installation Guide:

v4.7

A zipped version of the software site can be downloaded here.

Plugin provider: Netherlands eScience Center

Plugin version: 1.4.2.v202004060755

On NodePit since: 2022-12-14

Last update: 2023-09-30

KNIME versions: From v3.6 to v4.7

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