GPCRDB Protein similarity

Get similarity of query against subjects

Options

Advanced Options

Chunk size

Number of subjects fetched within a single webservice fetch, If nr of subjects is greater than chunk size then multiple requests will be made.

Base path

Url to use as base path for GPCRDB webservice

Timeout

Timeout in seconds to wait for GPCRDB webservice response

Input Ports

Table with Uniprot identifier as queries

Table with Uniprot identifier as subjects

Output Ports

GPCRDB protein similarity pairs

Best Friends (Incoming)

• Row Filter (45 %) Streamable
• Table Creator (18 %) 
• GPCRDB Protein residues (9 %) 
• GPCRDB Protein information (6 %) 
• GPCRDB Structures (6 %) 
• Show all 10 recommendations

Best Friends (Outgoing)

• Pivoting (64 %) 
• GPCRDB Structure-ligand interactions (18 %) 
• GPCRDB Protein similarity (9 %) 
• Hydrogen Manipulator (9 %) 

Installation

To use this node in KNIME, install 3D-e-Chem KNIME nodes from the following update site:

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Developers

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