IconYaraIndexer0 ×

Generic Workflow Nodes for KNIME: SeqAn version 2.3.2.201707261654 by Freie Universitaet Berlin, Universitaet Tuebingen, and the SeqAn Team

Yara - Yet Another Read Aligner.

See http://www.seqan.de/projects/yara for more information.

(c) Copyright 2011-2014 by Enrico Siragusa.

(c) Copyright 2013 by NVIDIA Corporation.

Web Documentation for YaraIndexer

Options

version-check
Turn this option off to disable version update notifications of the application.
verbose
Displays verbose output.
tmp-dir
Specify a temporary directory where to construct the index. Default: use the output directory.

Input Ports

A reference genome file. [fq,fq.bgzf,fq.gz,fq.bz2,fastq,fastq.bgzf,fastq.gz,fastq.bz2,fa,fa.bgzf,fa.gz,fa.bz2,fasta,fasta.bgzf,fasta.gz,fasta.bz2,faa,faa.bgzf,faa.gz,faa.bz2,ffn,ffn.bgzf,ffn.gz,ffn.bz2,fna,fna.bgzf,fna.gz,fna.bz2,frn,frn.bgzf,frn.gz,frn.bz2,embl,embl.bgzf,embl.gz,embl.bz2,gbk,gbk.bgzf,gbk.gz,gbk.bz2,raw,raw.bgzf,raw.gz,raw.bz2,sam,sam.bgzf,sam.gz,sam.bz2,bam]

Output Ports

Specify a filename prefix for the reference genome index. Default: use the filename prefix of the reference genome. [*,Inactive]

Views

YaraIndexer Std Output
The text sent to standard out during the execution of YaraIndexer.
YaraIndexer Error Output
The text sent to standard error during the execution of YaraIndexer. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Best Friends (Outgoing)

Update Site

To use this node in KNIME, install Generic Workflow Nodes for KNIME: SeqAn from the following update site:

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