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Generic Workflow Nodes for KNIME: SeqAn version by Freie Universitaet Berlin, Universitaet Tuebingen, and the SeqAn Team

Masai is a fast and accurate read mapper based on approximate seeds and multiple backtracking.

See http://www.seqan.de/projects/masai for more information.

(c) Copyright 2011-2012 by Enrico Siragusa.

Web Documentation for MasaiIndexer


Select the genome index type.
Specify an genome index prefix name. Default: use the genome filename prefix.
Specify a huge temporary folder. Default: use the genome folder.

Input Ports



MasaiIndexer Std Output
The text sent to standard out during the execution of MasaiIndexer.
MasaiIndexer Error Output
The text sent to standard error during the execution of MasaiIndexer. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)


To use this node in KNIME, install SeqAn from the following update site:


A zipped version of the software site can be downloaded here.

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