This node is currently not available in KNIME v5.4 — instead we’re showing this page for KNIME v4.7. You can use the version menu in the title bar to permanently switch your preferred version. This will also show the link to the update site.

MasaiIndexer

Masai is a fast and accurate read mapper based on approximate seeds and multiple backtracking.

See http://www.seqan.de/projects/masai for more information.

Web Documentation for MasaiIndexer

Options

index: Select the genome index type.
index-prefix: Specify an genome index prefix name. Default: use the genome filename prefix.
tmp-folder: Specify a huge temporary folder. Default: use the genome folder.

Input Ports

: [fasta,fa]

Output Ports

This node has no output ports

Popular Predecessors

YaraIndexer100 %

Popular Successors

No recommendations found

Views

MasaiIndexer Std Output: The text sent to standard out during the execution of MasaiIndexer.
MasaiIndexer Error Output: The text sent to standard error during the execution of MasaiIndexer. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

No workflows found

Developers

You want to see the source code for this node? Click the following button and we’ll use our super-powers to find it for you.

Installation

To use this node in KNIME, install the extension SeqAn from the below update site following our NodePit Product and Node Installation Guide:

v4.7

A zipped version of the software site can be downloaded here.

Plugin provider: Freie Universitaet Berlin, Universitaet Tuebingen, and the SeqAn Team

Plugin version: 2.4.1.202004061533

On NodePit since: 2022-12-06

Last update: 2024-12-23

KNIME versions: From v3.6 to v4.7

Deploy, schedule, execute, and monitor your KNIME workflows locally, in the cloud or on-premises – with our brand new NodePit Runner.

Try NodePit Runner!