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MasaiIndexer

Masai is a fast and accurate read mapper based on approximate seeds and multiple backtracking.

See http://www.seqan.de/projects/masai for more information.

Web Documentation for MasaiIndexer

Options

index: Select the genome index type.
index-prefix: Specify an genome index prefix name. Default: use the genome filename prefix.
tmp-folder: Specify a huge temporary folder. Default: use the genome folder.

Input Ports

: [fasta,fa]

Output Ports

This node has no output ports

Popular Predecessors

YaraIndexer100 %

Popular Successors

No recommendations found

Views

MasaiIndexer Std Output: The text sent to standard out during the execution of MasaiIndexer.
MasaiIndexer Error Output: The text sent to standard error during the execution of MasaiIndexer. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

No workflows found

Developers

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Installation

To use this node in KNIME, install the extension SeqAn from the below update site following our NodePit Product and Node Installation Guide:

v4.7

A zipped version of the software site can be downloaded here.

Plugin provider: Freie Universitaet Berlin, Universitaet Tuebingen, and the SeqAn Team

Plugin version: 2.4.1.202004061533

On NodePit since: 2022-12-06

Last update: 2024-04-13

KNIME versions: From v3.6 to v4.7

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