IconMasaiMapper0 ×

Generic Workflow Nodes for KNIME: SeqAn version 2.3.2.201707261654 by Freie Universitaet Berlin, Universitaet Tuebingen, and the SeqAn Team

Masai is a fast and accurate read mapper based on approximate seeds and multiple backtracking.

See http://www.seqan.de/projects/masai for more information.

(c) Copyright 2011-2012 by Enrico Siragusa.

Web Documentation for MasaiMapper

Options

mapping-mode
Select mapping mode.
mapping-block
Maximum number of reads to be mapped at once.
errors
Maximum number of errors per read.
seed-length
Minimum seed length.
no-gaps
Do not align reads with gaps.
index
Select the genome index type.
index-prefix
Specify an genome index prefix name. Default: use the genome filename prefix.
no-cigar
Do not output CIGAR string. This only affects SAM output.
no-verify
Do not verify seed hits.
no-dump
Do not dump results.
no-multiple
Disable multiple backtracking.

Input Ports

[fasta,fa]
[fastq,fasta,fa]

Output Ports

Specify an output file. Default: use the reads filename prefix. [raw,sam,Inactive]

Views

MasaiMapper Std Output
The text sent to standard out during the execution of MasaiMapper.
MasaiMapper Error Output
The text sent to standard error during the execution of MasaiMapper. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Update Site

To use this node in KNIME, install Generic Workflow Nodes for KNIME: SeqAn from the following update site:

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