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SpectraFilterWindowMower

Generic Workflow Nodes for KNIME: OpenMS version 2.6.0.202009301213 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Applies thresholdfilter to peak spectra.

Web Documentation for SpectraFilterWindowMower

Options

version
Version of the tool that generated this parameters file.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overrides tool-specific checks
test
Enables the test mode (needed for internal use only)
windowsize
The size of the sliding window along the m/z axis.
peakcount
The number of peaks that should be kept.
movetype
Whether sliding window (one peak steps) or jumping window (window size steps) should be used.

Input Ports

Icon
input file [mzML]

Output Ports

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output file [mzML]

Views

SpectraFilterWindowMower Std Output
The text sent to standard out during the execution of SpectraFilterWindowMower.
SpectraFilterWindowMower Error Output
The text sent to standard error during the execution of SpectraFilterWindowMower. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

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Installation

To use this node in KNIME, install OpenMS from the following update site:

KNIME 4.2

A zipped version of the software site can be downloaded here.

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Developers

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