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SeedListGenerator

Generic Workflow Nodes for KNIME: OpenMS version 2.3.0.201712211252 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Generates seed lists for feature detection.

Web Documentation for SeedListGenerator

Options

version
Version of the tool that generated this parameters file.
use_peptide_mass
[idXML input only] Use the monoisotopic mass of the best peptide hit for the m/z position (default: use precursor m/z)
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overwrite tool specific checks.
test
Enables the test mode (needed for internal use only)

Input Ports

Input file (see below for details) [mzML,idXML,featureXML,consensusXML]

Output Ports

Output file(s) [featureXML]

Views

SeedListGenerator Std Output
The text sent to standard out during the execution of SeedListGenerator.
SeedListGenerator Error Output
The text sent to standard error during the execution of SeedListGenerator. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Best Friends (Outgoing)

Update Site

To use this node in KNIME, install Generic Workflow Nodes for KNIME: OpenMS from the following update site:

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