OpenMSDatabasesInfo

Prints the content of OpenMS' enzyme and modification databases to TSV

Web Documentation for OpenMSDatabasesInfo

Options

version
Version of the tool that generated this parameters file.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overrides tool-specific checks
test
Enables the test mode (needed for internal use only)

Input Ports

This node has no input ports

Output Ports

Icon
Currently supported enzymes as TSV [tsv]
Icon
Currently supported modifications as TSV [tsv]

Popular Predecessors

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Popular Successors

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OpenMSDatabasesInfo Std Output
The text sent to standard out during the execution of OpenMSDatabasesInfo.
OpenMSDatabasesInfo Error Output
The text sent to standard error during the execution of OpenMSDatabasesInfo. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Workflows

Links

Developers

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Installation

To use this node in KNIME, install the extension OpenMS from the below update site following our NodePit Product and Node Installation Guide:

v5.2

A zipped version of the software site can be downloaded here.

Plugin provider: Freie Universitaet Berlin, Universitaet Tuebingen, ZIB (GKN-Team) and the OpenMS Team
Plugin version: 3.0.0.202307112039
On NodePit since: 2023-12-06
Last update: 2024-04-30
KNIME versions: v5.2, v5.1, v4.7, v4.6, v4.5, v4.4, v4.3, v4.2, v4.1, v4.0

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