MassCalculator

Options

version

Version of the tool that generated this parameters file.

in_seq

List of peptide sequences (mutually exclusive to 'in')

charge

List of charge states; required if 'in_seq' is given

format

Output format ('list': human-readable list, 'table': CSV-like table, 'mass_only': mass values only, 'mz_only': m/z values only)

average_mass

Compute average (instead of monoisotopic) peptide masses

fragment_type

For what type of sequence/fragment the mass should be computed

separator

Field separator for 'table' output format; by default, the 'tab' character is used

log

Name of log file (created only when specified)

debug

Sets the debug level

threads

Sets the number of threads allowed to be used by the TOPP tool

no_progress

Disables progress logging to command line

force

Overrides tool-specific checks

test

Enables the test mode (needed for internal use only)

Views

MassCalculator Std Output

The text sent to standard out during the execution of MassCalculator.

MassCalculator Error Output

The text sent to standard error during the execution of MassCalculator. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

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