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IDScoreSwitcher

Generic Workflow Nodes for KNIME: OpenMS version 2.6.0.202009301213 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Switches between different scores of peptide or protein hits in identification data

Web Documentation for IDScoreSwitcher

Options

version
Version of the tool that generated this parameters file.
proteins
Apply to protein scores instead of PSM scores
new_score
Name of the meta value to use as the new score
new_score_orientation
Orientation of the new score (are higher or lower values better?)
new_score_type
Name to use as the type of the new score (default: same as 'new_score')
old_score
Name to use for the meta value storing the old score (default: old score type)
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overrides tool-specific checks
test
Enables the test mode (needed for internal use only)

Input Ports

Icon
Input file [idXML]

Output Ports

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Output file [idXML]

Views

IDScoreSwitcher Std Output
The text sent to standard out during the execution of IDScoreSwitcher.
IDScoreSwitcher Error Output
The text sent to standard error during the execution of IDScoreSwitcher. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Incoming)

Best Friends (Outgoing)

Installation

To use this node in KNIME, install OpenMS from the following update site:

KNIME 4.2

A zipped version of the software site can be downloaded here.

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Developers

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