IDScoreSwitcher

Switches between different scores of peptide or protein hits in identification data

Options

version: Version of the tool that generated this parameters file.
new_score: Name of the meta value to use as the new score
new_score_orientation: Orientation of the new score (are higher or lower values better?)
new_score_type: Name to use as the type of the new score (default: same as 'new_score')
old_score: Name to use for the meta value storing the old score (default: old score type)
proteins: Apply to protein scores instead of PSM scores
log: Name of log file (created only when specified)
debug: Sets the debug level
threads: Sets the number of threads allowed to be used by the TOPP tool
no_progress: Disables progress logging to command line
force: Overrides tool-specific checks
test: Enables the test mode (needed for internal use only)

IDScoreSwitcher Std Output: The text sent to standard out during the execution of IDScoreSwitcher.
IDScoreSwitcher Error Output: The text sent to standard error during the execution of IDScoreSwitcher. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

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To use this node in KNIME, install the extension OpenMS from the below update site following our NodePit Product and Node Installation Guide:

v5.3

A zipped version of the software site can be downloaded here.

Plugin provider: Freie Universitaet Berlin, Universitaet Tuebingen, ZIB (GKN-Team) and the OpenMS Team

Plugin version: 3.2.0.202409181756

On NodePit since: 2024-10-17

Last update: 2024-11-15

KNIME versions: v5.3, v5.2, v5.1, v4.7, v4.6, v4.5, v4.4, v4.3, v4.2, v4.1, v4.0, v3.7, v3.6

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