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IDRTCalibration

Generic Workflow Nodes for KNIME: OpenMS version 2.5.0.202002201806 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Can be used to calibrate RTs of peptide hits linearly to standards.

Web Documentation for IDRTCalibration

Options

version
Version of the tool that generated this parameters file.
calibrant_1_reference
The RT of the first calibrant in the reference file.
calibrant_2_reference
The RT of the second calibrant in the reference file.
calibrant_1_input
The RT of the first calibrant in the input file. Please note that this value needs to be set. The default value -1.0 is not allowed.
calibrant_2_input
The RT of the second calibrant in the input file. Please note that this value needs to be set. The default value -1.0 is not allowed.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overwrite tool specific checks.
test
Enables the test mode (needed for internal use only)

Input Ports

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input file [idXML]

Output Ports

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output file [idXML]

Views

IDRTCalibration Std Output
The text sent to standard out during the execution of IDRTCalibration.
IDRTCalibration Error Output
The text sent to standard error during the execution of IDRTCalibration. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Installation

To use this node in KNIME, install OpenMS from the following update site:

KNIME 4.2
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Developers

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