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ClusterMassTraces

Generic Workflow Nodes for KNIME: OpenMS version 2.6.0.202009301213 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

Options

version
Version of the tool that generated this parameters file.
min_pearson_correlation
Minimal pearson correlation score
min_peak_nr
Minimal peak nr to output pseudo spectra
max_lag
Maximal lag
max_rt_apex_difference
Maximal difference of the apex in retention time
max_intensity_cutoff
Maximal intensity to be added to a spectrum
add_precursor
Add a precursor mass
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overrides tool-specific checks
test
Enables the test mode (needed for internal use only)

Input Ports

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Mass traces [consensusXML]

Output Ports

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output file [mzML]

Views

ClusterMassTraces Std Output
The text sent to standard out during the execution of ClusterMassTraces.
ClusterMassTraces Error Output
The text sent to standard error during the execution of ClusterMassTraces. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Best Friends (Outgoing)

Installation

To use this node in KNIME, install OpenMS from the following update site:

KNIME 4.2

A zipped version of the software site can be downloaded here.

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Developers

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