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CVInspector

Generic Workflow Nodes for KNIME: OpenMS version 2.6.0.202009301213 by Freie Universitaet Berlin, Universitaet Tuebingen, and the OpenMS Team

A tool for visualization and validation of PSI mapping and CV files.

Web Documentation for CVInspector

Options

version
Version of the tool that generated this parameters file.
cv_names
List of identifiers (one for each ontology file).
ignore_cv
A list of CV identifiers which should be ignored.
log
Name of log file (created only when specified)
debug
Sets the debug level
threads
Sets the number of threads allowed to be used by the TOPP tool
no_progress
Disables progress logging to command line
force
Overrides tool-specific checks
test
Enables the test mode (needed for internal use only)

Input Ports

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List of ontology files in OBO format. [obo]
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Mapping file in CVMapping (XML) format. [XML,opt.]

Output Ports

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Writes an HTML version of the mapping file with annotated CV terms [HTML]

Views

CVInspector Std Output
The text sent to standard out during the execution of CVInspector.
CVInspector Error Output
The text sent to standard error during the execution of CVInspector. (If it appears in gray, it's the output of a previously failing run which is preserved for your trouble shooting.)

Installation

To use this node in KNIME, install OpenMS from the following update site:

KNIME 4.2

A zipped version of the software site can be downloaded here.

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Developers

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