IBIS Helmholtz-Node extension for KNIME Workbench version 184.108.40.206707071203 by IBIS KNIME Team
This is a wrapper node for UnifiedGenotyper which is part of the Genome Analysis Toolkit (GATK). UnifiedGenotyper is based on a Bayesian genotype likelihood model and can identify SNPs and indels. Furthermore, it is possible to annotate all found variants with their corresponding dbSNP ID. Please note, that this tool has been deprecated in favor of HaplotypeCaller, a much more sophisticated variant caller that produces much better calls, especially on indels, and includes features that allow it to scale to much larger cohort sizes. For further information, see the online documentation of the UnifiedGenotyper.
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