This category contains 14 nodes.
Combines any number of gVCF files that were produced by the Haplotype Caller into a single joint gVCF file.
Combines any number of VCF lists that were produced by Pindel into a single joint VCF file.
Assess sequence coverage by a wide array of metrics, partitioned by sample, read group, or library.
Recalibration of sequencing quality scores.
Calls germline SNPs and indels via local re-assembly of haplotypes.
Computes the most likely genotype combination and phases trios and parent/child pairs.
Realignment around insertions and deletions.
Selects a subset of variants from a larger callset.
Calls SNPs and indels.
Filters variant calls based on INFO and FORMAT annotations.
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