This category contains 14 nodes.
Combines any number of gVCF files that were produced by the Haplotype Caller into a single joint gVCF file.
Combines any number of VCF lists that were produced by Pindel into a single joint VCF file.
Assess sequence coverage by a wide array of metrics, partitioned by sample, read group, or library.
Recalibration of sequencing quality scores.
Calls germline SNPs and indels via local re-assembly of haplotypes.
Computes the most likely genotype combination and phases trios and parent/child pairs.
Realignment around insertions and deletions.
Selects a subset of variants from a larger callset.
Calls SNPs and indels.
Filters variant calls based on INFO and FORMAT annotations.
Do you have feedback, questions, comments about NodePit, want to support this platform, or want your own nodes or workflows listed here as well? Do you think, the search results could be improved or something is missing? Then please get in touch! Alternatively, you can send us an email to email@example.com, follow @NodePit on Twitter, or chat on Gitter!
Please note that this is only about NodePit. We do not provide general support for KNIME — please use the KNIME forums instead.