FileLoader

The FileLoader loads either one or two separate input files or a list of files whereby it serves as a starting point for any NGS workflow.

Options

Input file: Choose an input file in fastA, BAM/SAM, fastQ, VCF or format. A list of files (as .csv, .tsv or .list) with one file path per line can also be loaded. In this way, several fastQ files of paired-end read experiments can be loaded. Pairs of fastQ files should be in the same row, but different columns, separated by tabs, white-spaces or commas.
Second optional fastQ file: In the case of paired end reads, a second fastQ file can be loaded.

This node has no input ports

: Cell 0: The loaded file
Cell 1 (optional): The second fastQ file (if existing)

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To use this node in KNIME, install the extension KNIME4NGS from the below update site following our NodePit Product and Node Installation Guide:

v5.2

Plugin provider: IBIS KNIME Team

Plugin version: 1.8.1.201707071203

On NodePit since: 2023-12-06

Last update: 2024-04-15

KNIME versions: Since v3.6

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