IBIS Helmholtz-Node extension for KNIME Workbench version 18.104.22.168707071203 by IBIS KNIME Team
FeatureCounts is a highly efficient general-purpose read summarizing program that counts mapped reads to genomic features such as genes, exons, promoter, gene bodies, genomic bins and chromosomal locations.
It can be used to count both RNA-seq and genomic DNA-seq reads.
FeatureCounts takes as input SAM/BAM files and an annotation file including chromosomal coordinates of features. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.
For more details, see: Liao et al, Bioinformatics 2013; doi: 10.1093/bioinformatics/btt656
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
To use this node in KNIME, install KNIME4NGS from the following update site:
You don't know what to do with this link? Read our NodePit Product and Node Installation Guide that explains you in detail how to install nodes to your KNIME Analytics Platform.
You want to see the source code for this node? Click the following button and we’ll use our super-powers to find it for you.
Do you have feedback, questions, comments about NodePit, want to support this platform, or want your own nodes or workflows listed here as well? Do you think, the search results could be improved or something is missing? Then please get in touch! Alternatively, you can send us an email to email@example.com, follow @NodePit on Twitter, or chat on Gitter!
Please note that this is only about NodePit. We do not provide general support for KNIME — please use the KNIME forums instead.