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FileLoader

IBIS Helmholtz-Node extension for KNIME Workbench version 1.8.1.201707071203 by IBIS KNIME Team

The FileLoader loads either one or two separate input files or a list of files whereby it serves as a starting point for any NGS workflow.

Options

Input file
Choose an input file in fastA, BAM/SAM, fastQ, VCF or format. A list of files (as .csv, .tsv or .list) with one file path per line can also be loaded. In this way, several fastQ files of paired-end read experiments can be loaded. Pairs of fastQ files should be in the same row, but different columns, separated by tabs, white-spaces or commas.
Second optional fastQ file
In the case of paired end reads, a second fastQ file can be loaded.

Output Ports

Icon
Cell 0: The loaded file
Cell 1 (optional): The second fastQ file (if existing)

Best Friends (Incoming)

Best Friends (Outgoing)

Workflows

Installation

To use this node in KNIME, install KNIME4NGS from the following update site:

KNIME 4.3

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Developers

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